HSAN-3

ELP1 | 2001

What Is HSAN-3?

HSAN-3 is a type of CMT caused by autosomal recessive mutations in the ELP1 gene. This gene provides instructions for making a component of the elongator complex, which is important for the development and survival of nerve cells, particularly those of the autonomic and sensory nervous systems. Mutations in the ELP1 gene disrupt this function, leading to impaired nerve signal transmission.

HSAN-3 is autosomal recessive, meaning that both copies of the gene must have a mutation to cause this subtype.

Clinical Features

Symptoms of HSAN-3 are present from birth and primarily affect the autonomic and sensory nervous systems. This subtype is characterized by widespread autonomic dysfunction alongside reduced pain and temperature sensation. Nerve conduction studies usually show somewhat slowed conduction velocities and reduced amplitudes, consistent with an axonal form of CMT.

HSAN-3 symptoms may include:

  • Absence of overflow tears when crying
  • Unstable blood pressure and heart rate
  • Autonomic crises, including episodes of vomiting
  • Reduced pain and temperature sensation
  • Reduced or absent reflexes
  • Poor coordination and unsteady gait
  • Difficulty feeding and swallowing, particularly in infancy
  • Foot drop
  • Additional symptoms not listed here

Disease Course

HSAN-3 is a disease present from birth that requires lifelong management. Autonomic crises, blood pressure instability, and difficulty with feeding and swallowing are significant sources of morbidity, particularly in infancy and childhood. With careful management of autonomic and respiratory complications, many individuals survive into adulthood, though the disease course remains variable and serious.

Clinical Basics

Subtype
HSAN-3

Classification
HSAN

Neuropathy Type
Axonal

Inheritance Pattern
autosomal recessive

Genetic Context

HGNC-Approved Gene Symbol
ELP1

Gene Full Name
Elongator Acetyltransferase Complex Subunit 1

HGNC Gene Alias(es)
IKBKAP

Chromosome
9q31.3

Zygosity of Responsible Variant
Homozygous or Compound Heterozygous

Variant Mechanism

Loss of Function (LoF)

Details

Mechanistic basis:
Biallelic

Confidence:
High

Prediction:
The literature predicts a biallelic loss-of-function mechanism for HSAN-3 (familial dysautonomia): the near-universal founder ELP1 splice variant (c.2204+6T>C) causes tissue-specific skipping of exon 20 and a truncated, unstable transcript, reducing functional Elongator ELP1, with a second loss-of-function allele in trans. Because residual or wild-type ELP1 restores function, this is loss rather than a dominant-negative effect, and restored wild-type is predicted to rescue.

Rationale:
The founder ELP1 c.2204+6T>C splice variant reduces functional Elongator ELP1 via tissue-specific exon 20 skipping, so restoring correct splicing or wild-type protein is predicted to rescue: a biallelic loss of function rather than a mutant that disrupts the wild-type.

ClinVar Pathogenic Variants

View HSAN-3 ClinVar Variants

HSAN-3 OMIM Entry

HSAN-3 OMIM

ELP1 OMIM Entry

ELP1 OMIM

More Info

HSAN-3 Research Opportunity

CMT Natural History Study

Original Discovery Publication

Publication Title

Familial Dysautonomia is Caused by Mutations of the IKAP Gene.

Authors

Anderson, S. L., Coli, R., Daly, I. W., Kichula, E. A., Rork, M. J., Volpi, S. A., Ekstein, J., & Rubin, B. Y.

Publication Date
March 1, 2001

Updated: July 18, 2026 | By: K. Raymond

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