HSN-1A

SPTLC1 | 2001

What Is HSN-1A?

HSN-1A is a type of CMT caused by autosomal dominant mutations in the SPTLC1 gene. This gene provides instructions for making part of an enzyme involved in the production of sphingolipids, a class of fats essential to nerve cell membranes. Mutations in the SPTLC1 gene disrupt this function, leading to impaired nerve signal transmission.

HSN-1A is autosomal dominant, meaning that just one of the gene’s two copies needs a mutation to cause this subtype.

Clinical Features

The age of symptom onset in HSN-1A is variable, ranging from childhood to adulthood. Symptoms typically begin in the lower extremities and progress over time to involve the upper limbs. Nerve conduction studies usually show somewhat slowed conduction velocities and reduced amplitudes, consistent with an axonal form of CMT.

HSN-1A symptoms may include:

  • Weakness in the feet and lower legs
  • Muscle atrophy
  • Foot drop
  • Reduced or absent reflexes
  • Reduced sensation
  • A steppage-style walking pattern
  • Foot deformities, including high arches, and hammertoes (clawed toes)
  • Progressive involvement of the hands and forearms
  • Difficulty with fine motor skills and manual dexterity
  • Additional symptoms not listed here

Disease Course

HSN-1A shows wide variability in severity and progression. Some individuals are mildly affected, while others develop a more severe disease. Disease progression is generally slow, and life expectancy is not reduced.

Clinical Basics

Subtype
HSN-1A

Classification
HSN

Neuropathy Type
Axonal

Inheritance Pattern
autosomal dominant

Genetic Context

HGNC-Approved Gene Symbol
SPTLC1

Gene Full Name
Serine Palmitoyltransferase Long Chain Base Subunit 1

Chromosome
9p22.31

Zygosity of Responsible Variant
Heterozygous

Variant Mechanism

Toxic Gain of Function (GoF)

Details

Mechanistic basis:
Neomorphic

Confidence:
High

Prediction:
The literature predicts a neomorphic gain-of-function mechanism for HSN-1A: dominant SPTLC1 missense mutations (for example C133W, V144D) shift the substrate specificity of serine palmitoyltransferase so it condenses alanine and glycine instead of serine, generating neurotoxic 1-deoxysphingolipids. Sptlc1 knockout does not phenocopy the disease and added wild-type does not neutralize the toxic species, arguing against loss or a dominant-negative effect and for an acquired toxic activity.

Rationale:
Dominant SPTLC1 missense alleles shift serine palmitoyltransferase substrate specificity toward alanine and glycine, generating neurotoxic 1-deoxysphingolipids that added wild-type does not neutralize and that Sptlc1 knockout does not reproduce: a neomorphic gain of function.

ClinVar Pathogenic Variants

View HSN-1A ClinVar Variants

HSN-1A OMIM Entry

HSN-1A OMIM

SPTLC1 OMIM Entry

SPTLC1 OMIM

More Info

HSN-1A Research Opportunity

CMT Natural History Study

Original Discovery Publication

Publication Title

Mutations in SPTLC1, encoding serine palmitoyltransferase, long chain base subunit-1, cause hereditary sensory neuropathy type I

Authors

Dawkins, J. L., Hulme, D. J., Brahmbhatt, S. B., Auer-Grumbach, M., & Nicholson, G. A.

Publication Date
March 27, 2001

Updated: July 18, 2026 | By: K. Raymond

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