PNKP

polynucleotide kinase 3'-phosphatase

Relationship to CMT

CMT2 AR 1 subtype 19q13.33
First described 2018
Subtype1

ClinVar Variants

Pathogenic and likely pathogenic variants in PNKP, as classified in ClinVar, are read live from NCBI.

Reported in CMT
Reported in Other Diseases

Reported in a disease other than CMT. Listed apart rather than counted as CMT variants.

Variants w/o a Recorded Disease

Pathogenic or likely pathogenic in ClinVar, submitted without a disease recorded.

What the review stars mean

Review stars are ClinVar’s measure of how well a classification is supported: four for a practice guideline, three for an expert panel review, two for agreement among multiple submitters, and one for a single submitter with criteria provided. A record with no criteria provided earns no stars and is not indexed.

Only aggregate germline records are indexed. Uncertain and conflicting classifications are not. Experts in CMT makes no claim to the accuracy of ClinVar data. This index is provided for informational purposes only.

Gene Function

PNKP plays a key role in the repair of DNA damage, functioning as part of both the non-homologous end-joining (NHEJ) and base excision repair (BER) pathways. Through its two catalytic activities, PNK ensures that DNA termini are compatible with extension and ligation by either removing 3'-phosphates from, or by phosphorylating 5'-hydroxyl groups on, the ribose sugar of the DNA backbone Source: UniProt

Indexed Identifiers

No HGNC Aliases
hgnc_idHGNC:9154
ensembl_gene_idENSG00000039650
coords_grch38chr19:49859882-49878351
coords_grch37chr19:50364461-50371166
entrez_id11284
omim_gene605610
uniprot_idsQ96T60
refseq_accessionNM_007254
mane_refseqNM_007254.4
mane_ensemblENST00000322344.8

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